CompositeVector
Namespace: GibbsSampling
Consists of functions to work with Frequency- and Probability-Composite-Vectors.
Nested types and modules
| Type | Description |
| FrequencyCompositeVector |
One dimensional array with fixed positions for each element. Use to track frequency of elements independent of position in source. |
| ProbabilityCompositeVector |
Functions and values
| Function or value | Description |
calculateSegmentScoreBy pcv bioItems
Signature: pcv:ProbabilityCompositeVector -> bioItems:(type) -> float
Type parameters: '?7928 |
Calculate the score of the given sequence based on the probabilities of the ProbabilityCompositeVector. |
createFCVOf resSources
Signature: resSources:(type) -> FrequencyCompositeVector
Type parameters: '?7909 |
Create a FrequencyCompositeVector based on BioArrays and exclude the specified segments. |
createFCVWithout (...)
Signature: motiveLength:int -> position:int -> resSource:(type) -> FrequencyCompositeVector
Type parameters: '?7913 |
Create FrequencyCompositeVector based on BioArray and excludes the specified segment. |
createNormalizedPCVOfFCV (...)
Signature: alphabet:'?7926 [] -> pseudoCount:float -> frequencyCompositeVector:FrequencyCompositeVector -> ProbabilityCompositeVector
Type parameters: '?7926 |
Create normalized ProbabilityCompositeVector based on FrequencyCompositeVector. |
createPCVOf caArray
Signature: caArray:FrequencyCompositeVector -> ProbabilityCompositeVector
|
Create a ProbabilityCompositeVector based on a FrequencyCompositeVector by replacing the integers with floats. |
fuseFrequencyVectors alphabet bfVectors
Signature: alphabet:'?7911 [] -> bfVectors:FrequencyCompositeVector [] -> FrequencyCompositeVector
Type parameters: '?7911 |
Create new FrequencyCompositeVector based on the sum of the positions of an array of FrequencyVectors. |
increaseInPlaceFCV (...)
Signature: bioItem:'?7905 -> frequencyCompositeVector:FrequencyCompositeVector -> FrequencyCompositeVector
Type parameters: '?7905 |
Increase counter of position by 1. |
increaseInPlaceFCVBy (...)
Signature: bioItem:'a -> frequencyCompositeVector:FrequencyCompositeVector -> n:int -> FrequencyCompositeVector
Type parameters: 'a |
Increase counter of position by n. |
increaseInPlaceFCVOf (...)
Signature: resSources:(type) -> backGroundCounts:FrequencyCompositeVector -> FrequencyCompositeVector
Type parameters: '?7915 |
Create FrequencyCompositeVector based on BioArray. |
increaseInPlacePCV (...)
Signature: bioItem:'a -> backGroundProbabilityVector:ProbabilityCompositeVector -> ProbabilityCompositeVector
Type parameters: 'a |
Increase counter of position by 1. |
increaseInPlacePCVBy (...)
Signature: bioItem:'a -> n:float -> backGroundProbabilityVector:ProbabilityCompositeVector -> ProbabilityCompositeVector
Type parameters: 'a |
Increase counter of position by n. |
substractSegmentCountsFrom (...)
Signature: source:(type) -> fcVector:FrequencyCompositeVector -> FrequencyCompositeVector
Type parameters: '?7917 |
Subtracts the amount of elements in the given source from the FrequencyCompositeVector. |
